[Biopython] converting unigene list in gene name list

francesco chiani francesco.chiani at gmail.com
Mon May 27 13:58:52 EDT 2013


Hi Peter,
As you said the input is a list look like
unigene_list=[" Z26634","....",".."]
The output another list gene_symbol =["ANK2", "...",".."]

Sorry for the very bad posed question.
Il giorno 27/mag/2013 17:36, "Peter Cock" <p.j.a.cock at googlemail.com> ha
scritto:

> On Mon, May 27, 2013 at 4:29 PM, francesco chiani
> <francesco.chiani at gmail.com> wrote:
> > HI pythonian,
> > I'm trying to convert a simple txt unigene list in a gene symbol list
> with
> > Bio.Entrez , let's semplify: just one unigene:
> > handle =Entrez.esearch(db="unigene", term="Z26634")
> > but..what I've got from Entrez.read is fairly unusefull, I think.. what
> I'm
> > doing wrong?
> >
> > kindly
>
> Hi Francesco,
>
> I'm not clear what you are hoping to achieve here.
>
> Could you give an example of the input data (e.g. a list like
> ["Z26634", ...] perhaps?) and the desired output to match?
>
> Thanks,
>
> Peter
>


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