[Biopython] NCBIXML.parse
Mic
mictadlo at gmail.com
Thu May 16 00:57:12 EDT 2013
Hi,
Why does NCBIXML.parse attach UR090 to the UniRef90 ids and as results I
get is UR090:UniRef90_Q9FX16 with the following code:
with open("x.blastp.xml") as bf:
blast_records = NCBIXML.parse(bf)
for blast_record in blast_records:
query_name = blast_record.query
for alignment in blast_record.alignments:
hit_id = alignment.hit_id
Is it possible to remove UR090 or maybe it should be UR090:Q9FX16?
Is UR090:UniRef90_Q9FX16 compatible Gbrowse2?
Thank you in advance.
Mic
More information about the Biopython
mailing list