[Biopython] pass a variable to a blast cmd
Frederico Moraes Ferreira
ferreirafm at usp.br
Tue Jun 18 14:12:33 UTC 2013
Hi there,
Is there a clever way of passing a variable to the blast_cline command like:
blast_cline = NcbiblastpCommandline((cmd = "blastp", task =
"blastp-short",
query = inf, matrix = "PAM30",
outfmt = "5", db = "%s",
remote = True, comp_based_stats
= "0",
out = "blast_out.xml") % database)
or should I have to have one command to each option.
Best,
Fred
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