[Biopython] blastdbcmd

Frederico Moraes Ferreira ferreirafm at usp.br
Fri Feb 22 17:01:02 UTC 2013


Hi there Biopythoneers,
As long as I know, there isnt't a blastdbcmd submodule into Biopython. 
So, I've been writing the blast matched sequences ID's to a file, 
fetching them all with a subprocess and reading with SeqIO afterwards. 
In some cases, however, I miss a blastdbcmd parser to make things easy. 
How do you guys are dealing with this?
Best,
Fred



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