[Biopython] Affy CEL files

[Paulo Nuin]

Hi

That's an idea. I will see what I can do on my end. We are analalysing a lot of microarrays and it would be helpful to have something in Python instead of R only.

Cheers
Paulo


On 2012-10-13, at 7:41 AM, Michiel de Hoon <mjldehoon at yahoo.com> wrote:

> As far as I know nobody is actively working on this. I would really like to see better support for Affy and other microarrays. I have been thinking to implement something myself but I haven't found the time to do so. Would you (or anybody else) be willing to contribute some code or documentation for Affy microarrays in Biopython?
> 
> Thanks,
> -Michiel.
> 
> --- On Wed, 10/10/12, Paulo Nuin <nuin at genedrift.org> wrote:
> 
>> From: Paulo Nuin <nuin at genedrift.org>
>> Subject: [Biopython] Affy CEL files
>> To: "BioPython Mailing List" <biopython at lists.open-bio.org>
>> Date: Wednesday, October 10, 2012, 9:55 PM
>> Hi
>> 
>> I found some old discussions on parsing CEL files generated
>> from Affymetrix microarrays (and such). What is the current
>> status of this in BioPython? I was able to find some classes
>> but there is not a lot of documentation about them.
>> 
>> Thanks in advance
>> 
>> Paulo
>> _______________________________________________
>> Biopython mailing list  -  Biopython at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biopython
>>