[Biopython] server for automatic high-quality search & alignment?

[Iddo Friedberg]

Did you try ffas?

On Wed, Mar 7, 2012 at 8:08 PM, Nat Echols <nathaniel.echols at gmail.com>wrote:

> Hi list--
>
> Does anyone know of a remotely callable web service similar to HHPred
> in functionality - i.e. capable of running a homology search against
> the PDB, and returning high-quality alignments?  We're using NCBI
> BLAST for this right now and will probably use the EBI's WU-BLAST
> server in the future, but these are considered inferior to HHPred for
> weak homologs.  Unfortunately HHPred isn't something we can use from
> Python, at least not in production code.
>
> thanks,
> Nat
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>



-- 
Iddo Friedberg
http://iddo-friedberg.net/contact.html
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