[Biopython] Installation on Ubuntu 11.10 64-bit (Loader.py:799)

[Peter Cock]

On Tuesday, January 17, 2012, Mariam Reyad Rizkallah <mrrizkalla at gmail.com>
wrote:
> Dear Biopython community,
>
> I am installing Biopython v. 1.58 and BioSQL 1.0.1 on Ubuntu 11.10 64-bit
> virtual machine (Python 2.7.2+). When I run tests, I face this warning.
>
> test_BioSQL ...
>> ~/biopython-1.58/build/lib.linux-i686-2.7/BioSQL/Loader.py:799:
>> UserWarning: order location operators are not fully supported
>>   % feature.location_operator)
>> ok
>> test_BioSQL_SeqIO ...
>> ~/biopython-1.58/build/lib.linux-i686-2.7/BioSQL/Loader.py:799:
>> UserWarning: bond location operators are not fully supported
>>   % feature.location_operator)
>
> ok
>
>
> Is it related to the platform (64-bit)?
>

No, it's harmless - an obscure location string used in
GenBank files that we don't store faithfully in BioSQL.
Ideally we'd silence that warning in the unit tests...

Peter