[Biopython] SeqIO fasta "fakes" recognition
Marco Galardini
marco.galardini at unifi.it
Thu Feb 23 17:38:26 UTC 2012
On 02/23/2012 05:35 PM, Eric Talevich wrote:
>
> I suppose there's always:
>
> try:
> record = SeqIO.read("gigo.png", "fasta")
> assert str(record.seq).isalpha()
> except:
> # complain...
>
>
Thanks for the hint, I've implemented this (using the parse method) and
i'll see how it will perform (i guess it will had some overhead).
Marco
--
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Marco Galardini
DBE - Department of Evolutionary Biology
University of Florence - Italy
e-mail: marco.galardini at unifi.it
www: http://www.unifi.it/dblage/CMpro-v-p-51.html
phone: +39 055 2288249
mobile: +39 340 2808041
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