[Biopython] Digital gene expression

Michiel de Hoon mjldehoon at yahoo.com
Sun Feb 12 03:35:44 UTC 2012


Hi everybody,

EdgeR and DESeq are popular R packages to analyze differential expression in digital gene expression methodologies such as RNAseq and CAGE. Is something similar to these R packages available in Python (or is anybody working on such a module for Biopython)? Not that I don't like EdgeR / DESeq, but I'd prefer something in Python so that I can understand what I am doing.

Thanks,
-Michiel.



More information about the Biopython mailing list