[Biopython] Using bioPython and bioSQL

[Sean Davis]

Hi, Animesh.

Depending on the types of queries, building small CGI scripts or even
a small web application can be quite useful.  Most recently, I have
been using the flask micro-framework ( http://flask.pocoo.org/ ) for
building such small applications.  If you can figure out how to do the
queries that you want with biopython or SQL, then it isn't too hard to
translate that to a couple of web pages, one for gathering input from
the user and a second for delivering results.

Sean


On Thu, Oct 6, 2011 at 7:27 AM, Animesh Agrawal
<animesh.agrawal at anu.edu.au> wrote:
> Hi Sean,I definitely want a web interface. Queries should be limited in scope.
> Cheers,
> Animesh
>
> On 10/06/11, Sean Davis  <sdavis2 at mail.nih.gov> wrote:
>> Hi, Animesh.
>>
>> How do you want folks to query the database?  Web?  Command-line?  Are
>> the queries limited in scope or do you want to provide something fully
>> general?
>>
>> Sean
>>
>> On Thu, Oct 6, 2011 at 6:25 AM, Animesh Agrawal
>> <animesh.agrawal at anu.edu.au> wrote:
>> > Hi All,I am trying to develop a interface for a local sequence depository in my lab. Using biopython cookbook examples I have been able to populate the database. But to query the database I want to create an interface so all other members in my lab can access it. I have no experience in doing this kind of development. I need some advice on best way of doing it and if there are already developed modules in biopython which can help me in attaining my objectives.
>> > Cheers
>> > Animesh
>> > Animesh Agrawal
>> > PhD Scholar
>> > The John Curtin School of Medical Research
>> > Australian National University
>> > Canberra, Australia
>> > _______________________________________________
>> > Biopython mailing list  -  Biopython at lists.open-bio.org
>> > http://lists.open-bio.org/mailman/listinfo/biopython
>> >
>>
>>
>
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