[Biopython] structural alignment

[Peter Cock]

On Thu, Nov 10, 2011 at 3:46 PM, Bala subramanian
<bala.biophysics at gmail.com> wrote:
> Friends,
> I have 50 conformations of a peptide. I want to do a pair wise structural
> alignment and obtain a score for each pair. I would like to know
> i) if there is any inbuilt function to do structural alignment in biopython
> ii)if there is a wrapper in biopython for any structural alignment software
>
> Thanks,
> Bala

SVD works nicely for some tasks, e.g.
http://www.warwick.ac.uk/go/peter_cock/python/protein_superposition/

Peter