[Biopython] gff3 problem
Brad Chapman
chapmanb at 50mail.com
Fri May 20 07:15:35 EDT 2011
Peter;
[SeqFeature support for not-stranded elements]
> So was the consensus that we should reword the Bio.SeqFeature
> docstring so say the four valid values for strand are (with GFF3
> equivalents in brackets):
>
> +1 = Forward (+ in GFF3)
> -1 = Reverse (- in GFF3)
> 0 = Not stranded (. in GFF3)
> None = Unknown (? in GFF3)
>
> And should features on a protein sequence should then have strand 0?
That sounds great. I can make the corresponding change to the GFF
library. Let me know if there are any other roadblocks to
integrating that. Thanks much,
Brad
More information about the Biopython
mailing list