[Biopython] SeattleSeq type library

[Adrian Johnson]

Dear group,

Is there a library in biopython that takes a pileup file as an input
and  processes the file and  gives back an output with annotations
with gene name, NM accession, mutation
type and type of change (splice site, coding etc) and many other details related
to protein and gene sequence.


I use SeattleSeq Annotation and the limitation is that it is a web based tool
and limits the ability to use it in a pipeline. I am interested in similar tools
that can be used through a command line parameters.


The ideal situation would be a BioPython module that uses SOAP interface to
either NCBI or UCSC.



Thanks