[Biopython] Bug in Phylo.write('phyloxml')?
Jon Sanders
jsanders at oeb.harvard.edu
Fri Dec 16 18:44:07 UTC 2011
My XML trees exported in biopython (with confidence values, thanks Eric!)
don't open in most XML tree viewing programs.
The problem seems to be a spurious <name /> tag at the beginning of the
tree.
<phy:phyloxml xmlns:phy="http://www.phyloxml.org">
<phy:phylogeny rooted="false">
<phy:name />
<phy:clade>
If I delete this tag they open fine.
--
"If you hold a cat by the tail you learn things you cannot learn any other
way."
--Mark Twain
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