[Biopython] Working with genomic intervals
Aaron Quinlan
aaronquinlan at gmail.com
Fri Aug 12 18:39:34 UTC 2011
All,
I apologize in advance if this is a naive question. I am wondering if BioPython provides libraries for working with genomic intervals in BED, GFF, or any other like format? I am looking for libraries that handle the parsing of files in these formats into Python objects, as well as libraries for manipulating (intersection, merging, counting, etc.) intervals. I know this exists in Galaxy's bx-python, but am wondering if there are similar libraries in BioPython?
Gratefully,
Aaron
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