[Biopython] GFF3Writer
Brad Chapman
chapmanb at 50mail.com
Sat Apr 9 19:28:53 UTC 2011
Michal;
> Thank you it works. How is it possible to create ##sequence-region
> with the writer like described in
> http://www.sequenceontology.org/gff3.shtml:
>
> ##gff-version 3
> ##sequence-region ctg123 1 1497228
> ctg123 . gene 1000 9000 . + . ID=gene00001;Name=EDEN
> ctg123 . TF_binding_site 1000 1012 . + . Parent=gene00001
> ctg123 . mRNA 1050 9000 . + . ID=mRNA00001;Parent=gene00001
Thanks for the feedback. I added in support for this directive if
you pull the latest version from GitHub:
https://github.com/chapmanb/bcbb/tree/master/gff
This will work as long as you have a sequence specified for the
record. Let me know if you run into any problems,
Brad
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