[Biopython] Feature request: conservation line for fasta-m10 format

[Peter Cock]

Hi Aurelien,

I was looking at the FASTA v36 output this week, and there is a new line type >-- when there is more than one HSP for a query and match sequence. Biopython 1.57 will not cope with this, but  the latest code on the trunk on github should.

Note I ended up rewriting the entire parser (on the plus side it is much shorter now), so if you could help test it that would be very useful.

Thanks,

Peter

On 28 Apr 2011, at 19:33, Aurelien Mazurie <ajmazurie at oenone.net> wrote:

> 
>    This was another question I had, actually. I am using the very latest FASTA version, and I am aware it now reports more than one HSP--and not just the best HSP as before. I didn't know if the latest official Biopython version took this into account; from what you say I see it doesn't. I'll definitively pull the git repository to have the latest code, if needed.
> 
>    Aurelien
>