[Biopython] New project for Google Summer of Code 2011

[Rodrigo Faccioli]

Hello,

I would like to comment about my project. I have talked to Eric Talevic and
Joao about it and my intentation to contribute to BioPython. However, my PhD
project had some unexpected situations which didn't allow me time to merge
that project to BioPython. This year is my last year to finish my PhD.

I liked your project Mikael. Maybe, we can talk about it and my project. I
believe we can merge them and make a good project for BioPython. Basically,
my mainly contribution for your project will be SEQRES section at PDB files
which I have worked as BioPython object.

My project is [1].

[1] https://github.com/rodrigofaccioli/ContributeToBioPython

Cheers,

--
Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
http://laips.sel.eesc.usp.br
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218
Public Profile - http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5


On Fri, Apr 8, 2011 at 7:34 AM, Brad Chapman <chapmanb at 50mail.com> wrote:

> Mikael;
> Great work on getting this together. Some last minute suggestions:
>
> - Make the link to your GitHub repository part of your 'On the
>  author' section. Reviewers will definitely want to see your
>  previous work so a sentence pointing it out will prevent it being
>  overlooked in the Additional Info section.
>
> - Week 1 is the start of coding, so you should move your preparation
>  bullet points (Study/Evaluate) to the community bonding period,
>  and leave the coding period only for work.
>
> - You mention tests in several places but without any detail.
>  Reviewers will want to see that you've thought out the
>  functionality you are planning to unit test further than "I will
>  write tests for everything."
>
> - Week 11 needs some text to demonstrate how you plan to wrap things
>  up. Keep in mind that's the last thing a reviewer will read so it
>  should leave a good impression.
>
> Thanks again for all the work,
> Brad
>
> > Dear all,
> >
> > I just submitted my proposal few minutes ago on google-melange ! So you
> will
> > find everything you want on this link :
> >
> http://www.google-melange.com/gsoc/proposal/review/google/gsoc2011/mika_el/1
> >
> > As I'm not sure everybody can access to it, I add in attachment the
> proposal
> > document with the new timeline, stucking to the Google agenda of GSoC.
> >
> > I'm wainting for your reviews,
> >
> > Cheers,
> >
> > Mikael
> >
> >
> >
> > On Fri, Apr 8, 2011 at 1:09 AM, Mikael Trellet <mikael.trellet at gmail.com
> >wrote:
> >
> > > Good might to all,
> > >
> > > A night update : I created successfully everything I needed for my
> github
> > > account (not without problems !!). So you can find on these two links,
> my
> > > group project from my first year of master and a simple script I wrote
> 2
> > > months ago for my daily work :
> > >
> > > https://mtrellet@
> github.com/mtrellet/Protein-classification--2009-2010-Master-1-.git
> > > https://mtrellet@github.com/mtrellet/Parsing-PDB-files.git
> > >
> > > Unfortunately my master project comments are in french...
> > >
> > > I will finish the timeline according to the google agenda tomorrow
> morning
> > > and I will submit a first draft of my project just after. So you have
> still
> > > time to ask me some questions or make some remarks, I'm available to
> answer
> > > as fast as possible to your interrogations.
> > >
> > > Cheers,
> > >
> > > Mikael
> > >
> >
> >
> >
> > --
> > Mikael TRELLET,
> > Computational structural biology group, Utrecht University
> > Bijvoet Center,
> > The Netherlands
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