[Biopython] ERROR: test_doctests

[Peter Cock]

On Thu, Apr 7, 2011 at 2:21 PM, Michal <mictadlo at gmail.com> wrote:
> Hello,
> During test BioPython 1.57 on Fedora 14(64bit) has given me the following
> error:
> $ python setup.py build
> $ python setup.py test
> .....
> Bio.PDB.Polypeptide docstring test ... ok
> ======================================================================
> ERROR: test_doctests (test_Tutorial.TutorialTestCase)
> Run tutorial doctests.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>  File "test_Tutorial.py", line 115, in test_doctests
> ValueError: 6 Tutorial doctests failed: test_from_line_02697,
> test_from_line_02816, test_from_line_02849, test_from_line_03390,
> test_from_line_03413, test_from_line_03920
>
> ----------------------------------------------------------------------
> Ran 150 tests in 260.287 seconds
>
> FAILED (failures = 1)
>
> Michal

Hmm. Can you try this, it should give some more detailed output:

$ cd Tests/
$ python test_Tutorial.py
Runing Tutorial doctests...
Tests done

(although we're expecting it to fail on your machine).

Thanks,

Peter