[Biopython] reading two fastq files at the same time
xyz
mitlox at op.pl
Mon Sep 6 13:24:14 UTC 2010
Hi,
How is it possible to read two fastq files at the same time in
BioPython? I have the following BioRuby example:
require 'bio'
begin
fq1 = Bio::FlatFile.open(Bio::Fastq, ARGV[2])
fq2 = Bio::FlatFile.open(Bio::Fastq, ARGV[3])
while (entry1 = fq1.next_entry) and (entry2 = fq2.next_entry)
fastq_A1 = entry1.entry_id
fastq_A2 = entry1.seq
fastq_B1 = entry2.entry_id
fastq_B2 = entry2.seq
end
rescue => err
raise "Exception: #{err}"
end
Thank you in advance.
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