[Biopython] Mafft Alignment Output file

[Peter]

On Mon, Nov 29, 2010 at 11:05 AM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> On Mon, Nov 29, 2010 at 10:26 AM, Ömer <arkanion at gmail.com> wrote:
>> I installed mafft.bat file to run an alignment similar to clustalw.exe
>> shown in the Tutorial. I prefer Mafft because it has an  option to
>> choose the matrix such as Blosum 45 , 80 etc.
>
> I think MAFFT is also faster, especially with large alignments.

Sorry, I meant MUSCLE, not MAFFT. I haven't compare the speed of MAFFT.

Peter