[Biopython] Extracting data genpept files

[Ara Kooser]

Peter,

   Thank you for your response.
>
> If I understood your aim, try using this if the taxonomy isn't in the
> annotations
> dictionary (which would give a KeyError),
>
> tax_records = gb_record.annotations.get("taxonomy", [])


I will give this a try later in the morning.


>
> Perhaps you could clarify if you want the taxonomy (a list of  
> variable length)
> to go in one column of your CSV file?
>

I would like the whole taxonomy to go into one column but couldn't  
figure out how to do that.



> Peter
>
> P.S. I prefer using tab separated variables (tsv) over csv, as I  
> find commas
> in descriptions quite often - and although this can be dealt with it  
> is fiddly.


I wanted to use tabs but here again wasn't sure of how to code that.  
Commas have been my bane while trying to write this code.


Ara