[Biopython] Cross_match

[Chris Fields]

On May 31, 2010, at 3:54 PM, Peter wrote:

> On Mon, May 31, 2010 at 9:48 PM, Alvaro F Pena Perea wrote:
>> Hi all,
>> I'm working on small RNA sequences from NGS. In this regard, I
>> made an alignment between the sequences and the genome with
>> cross match with the tags option. I wonder if there is some method
>> in bioperl to parse cross_match alignments.
> 
> I think BioPerl's SearchIO supports cross_match, but Biopython
> doesn't (yet).
> 
> Peter

Yes, BioPerl does.

perldoc Bio::SearchIO::cross_match

chris