[Biopython] biopython and jython

[Rodrigo Faccioli]

Hi,

You should create a script working with Bio.PDB. You call this script as a
process in your Java Servlets.

We've developed a web-site [1] where its front-end is jsp and its back-end
is working with BioPython.PDB and more.

[1] http://glu.fcfrp.usp.br:8180/newSite/


--
Rodrigo Antonio Faccioli
Ph.D Student in Electrical Engineering
University of Sao Paulo - USP
Engineering School of Sao Carlos - EESC
Department of Electrical Engineering - SEL
Intelligent System in Structure Bioinformatics
http://laips.sel.eesc.usp.br
Phone: 55 (16) 3373-9366 Ext 229
Curriculum Lattes - http://lattes.cnpq.br/1025157978990218
Public Profile - http://br.linkedin.com/pub/rodrigo-faccioli/7/589/a5


On Thu, May 20, 2010 at 11:41 AM, Peter <biopython at maubp.freeserve.co.uk>wrote:

> On Thu, May 20, 2010 at 3:38 PM, Silvio Tschapke wrote:
> > Hi all,
> >
> > can anybody tell me if biopython supports jython?
>
> Most of it works, yes. Parts of Biopython use code written in C or NumPy
> (e.g. Bio.Cluster and Bio.PDB) which won't work though.
>
> > I am using Java Servlets in tomcat and Jython and thought there won't be
> > problem to call Biopython modules from Jython. But Biopython is not
> included
> > in jython.jar.
>
> I think there is a Jython path environment variable you can set...
>
> Peter
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