[Biopython] help

Peter biopython at maubp.freeserve.co.uk
Wed Mar 10 13:11:59 UTC 2010


On Wed, Mar 10, 2010 at 12:57 PM, ismail kaarouch <ismail.fsr at gmail.com> wrote:
> when i import class Translate from module Bio i have this msg & i will be
> forced to re installate the Biopython softwar
> so i need your help
>
> IDLE 2.6.2
>>>> from Bio import Translate
>
> Warning (from warnings module):
>  File "C:\Python26\lib\site-packages\Bio\Translate.py", line 23
>    DeprecationWarning)
> DeprecationWarning: Bio.Translate and Bio.Transcribe are deprecated, and
> will be removed in a future release of Biopython. Please use the functions
> or object methods defined in Bio.Seq instead (described in the tutorial). If
> you want to continue to use this code, please get in contact with the
> Biopython developers via the mailing lists to avoid its permanent removal
> from Biopython.

Hi Ismail,

This warning is saying you shouldn't be using Bio.Translate (it will be
removed from Biopython). Are you reading an out of date tutorial?

The current tutorial is here:
http://www.biopython.org/DIST/docs/tutorial/Tutorial.html
http://www.biopython.org/DIST/docs/tutorial/Tutorial.pdf

Peter




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