[Biopython] Bio.SeqIO.index() - gzip support and/or index stored on disk?
Chris Fields
cjfields at illinois.edu
Sat Jun 5 10:59:59 UTC 2010
On Jun 4, 2010, at 2:04 PM, Peter wrote:
> On Fri, Jun 4, 2010 at 7:25 PM, Laurent <lgautier at gmail.com> wrote:
>
>>
>> More generally, compression is part of the HDF5 format and this with chunks
>> could prove the most battle-tested way to access entries randomly.
>>
>
> But (thus far) no sequence data is stored in HDF5 format (is it?).
>
> Peter
There will be a presentation this year at BOSC on BioHDF (HDF5 for bioinformatics). There is a website:
http://www.hdfgroup.org/projects/biohdf/
chris
More information about the Biopython
mailing list