[Biopython] Cross_match

[Alvaro F Pena Perea]

Sorry about the mistake, I meant to say Biopython instead bioperl. Well, now
I know that SearchIO supports cross match in bioperl.
Anyway, I agree that it would be great if we could make some method for
cross match in Biopython. In my case I'm more interested in the hit
information than the pairwise alignment. I'll take a look to the Bio.AlignIO


2010/5/31 Peter <biopython at maubp.freeserve.co.uk>

> On Mon, May 31, 2010 at 11:08 PM, Chris Fields wrote:
> >
> > Yes, but only one file:
> >
> >
> http://github.com/bioperl/bioperl-live/blob/master/t/data/testdata.crossmatch
> >
> > chris
> >
>
> Thanks Chris - that saved me searching ;)
>
> Alvaro - would you just want the pairwise alignment,
> or are your interested in the hit information (scores etc)?
> I'm wondering if adding support in Bio.AlignIO would
> be enough (similar to how we support FASTA -m 10
> output already).
>
> Peter
>