[Biopython] SeqIO.dict

[Peter]

On Fri, Jun 11, 2010 at 3:12 AM, Willis, Jordan R
<jordan.r.willis at vanderbilt.edu> wrote:
> Thanks Peter,
>
> One last question:
>
> During my blast runs, at about midway through it will truncate
> my sequences... For example:
>
> GYTFTNFA ----> Query
> GY  FTNFA ----> Score of: 34.0
> GYIFTNFA ----> Template
> Template becomes the query:
> GYIFTN ----> Query
> GYIFTN ----> Score of: 30.0
> GYIFTN ----> Template
>
>
> All sequences are the exact same size and I can't figure out which
> blast parameters would show all 8 amino acids every time.
>
> Jordan

Hi Jordan,

I'm sorry but I don't understand what you are trying to describe.

Note that BLAST find local alignments not global alignments (it will
not try and align all of your query to a match in the database).

Peter