[Biopython] Helpa Newbie Please.py
Gary
gnd9 at cox.net
Sun Jun 6 19:24:15 EDT 2010
Subject: Helpa Newbie Please.py
Just started into this fantastic project & can't get past Cookbook 2.4.2 parsing example!
from Bio import SeqIO
for seq_record in SeqIO.parse("ls_orchid.gbk", "genbank"):
print seq_record.id
print repr(seq_record.seq)
print len(seq_record)
ALWAYS REPLYS:
Traceback (most recent call last):
File "(stdin)"' line1, in (module)
File "C:\Python26\lib\site-package\Bio\SeqIO\_init_.py"' line 483, in parse
IOError: [Error 2] No such file or directory: 'ls_orchid.gbk'
I do have the file in fact I put it in several locations.... genbank folder, SeqIO folder, Python2.6 folder....
Does anyone know which folder SeqIO is looking for the orchid file?
I assume thats my problem
Thanks in advance
Helpa Newbie Please.py
More information about the Biopython
mailing list