[Biopython] (least) Favorite PDB models?
Peter Cock
p.j.a.cock at googlemail.com
Thu Jul 1 09:33:04 UTC 2010
On Thu, Jul 1, 2010 at 4:06 AM, Bryan Lunt <lunt at ctbp.ucsd.edu> wrote:
> Greetings All,
>
> So I have finished (for now) the section of my program that maps PDB
> model residues to SEQRES residues...
>
> And every programmer's favorite thing is QA, right?
It should be ;)
Unit tests are good!
> Does anyone have some suggestions of particularly ugly PDB models
> (discontinuous, strange residue numberings, etc)
> that I can test it on?
There are a few odd files listed here,
http://www.warwick.ac.uk/go/peter_cock/python/ramachandran/top500/
For example 1DIN and 2HMZ showed some interesting behaviour
with fractional occupancy - these should be hard to map onto a single
sequence!
Peter
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