[Biopython] how to find closest genes for a given location
Sameet Mehta
msameet at gmail.com
Thu Feb 25 06:44:01 UTC 2010
Dear all,
I have multiple locations from human genomes. I want to determine
what are the closest genes on either side of the location, and if it
is in the location how far from the TSS the given location is. I was
thinking of using the CCDS database, because it contains information
for the genes that have been verified. Is there any other
better/smarter way of doing it.
all help is appreciated,
Sameet
--
Sameet Mehta, Ph.D.,
Research Associate,
Chromatin Biology Laboratory,
National Centre for Cell Science,
NCCS Complex,
University of Pune Campus,
Pune 411007
Phone: +91-20-25708158
Other Email: sameet at nccs.res.in
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