[Biopython] Retrieving fasta seqs

Peter biopython at maubp.freeserve.co.uk
Tue Feb 2 16:58:30 UTC 2010


On Tue, Feb 2, 2010 at 4:44 PM, Kevin <aboulia at gmail.com> wrote:
> My apologies! I didn't realize it's a off topic problem. Thanks for the link
> it is quite informative!

Well, its not off topic in that you are tacking a Biological problem with
Python. Its just not a problem with Biopython itself.

> So can I presume the index method to have failed is due to memory
> issues as well?

I thought that was already confirmed from the MemoryError in your
traceback when using Bio.SeqIO.index?
http://lists.open-bio.org/pipermail/biopython/2010-January/006127.html

Peter



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