[Biopython] help with parsing EMBL

Peter biopython at maubp.freeserve.co.uk
Mon Apr 26 16:28:31 UTC 2010


On Mon, Apr 26, 2010 at 5:02 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
>
> From Nick's other email about the FASTA file,
> http://lists.open-bio.org/pipermail/biopython/2010-April/006451.html
> I can can see that the funny EMBL file came from the Berkeley Drosophil
>  Genome Project (BDGP)'s Natural Transposable Element Project:
> http://www.fruitfly.org/p_disrupt/TE.html
>
> Specifically this file:
> http://www.fruitfly.org/data/p_disrupt/datasets/ASHBURNER/D_mel_transposon_sequence_set.embl
>
> I'll email them to alert them about the three obvious errors I discussed.

There is also something odd going on with the features, which the
Biopython parser seems to be ignoring...

Peter




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