[Biopython] Entrez.efetch bug?
Morten Kjeldgaard
mok at bioxray.dk
Thu Apr 15 15:15:01 UTC 2010
Hi,
I am getting an error with Entrez.efetch() with Biopython version 1.51. This
is my handle:
handle = Entrez.efetch(db='protein', id='114391',rettype='gp')
When I subsequently do this:
record = Entrez.read(handle)
I get a syntax error from Expat:
ExpatError: syntax error: line 1, column 0
However, if I do the following, it works:
record = handle.read()
but then I need to parse the resulting record using the Genbank parser,
which is a nuisance since I normally should get this for free from the
Entrez module.
Comments, anyone?
-- Morten
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