[Biopython] Question about efetch output format
jorma kala
jjkk73 at gmail.com
Thu Sep 3 16:06:19 UTC 2009
Hi,
I'm trying to retrieve a record from protein database (I found the record id
by running Entrez.esearch)
handle = Entrez.efetch(db="protein", id='483329',mode='xml')
print handle.read()
Although I specify xml mode, the result comes in a quite confusing format
using braces (I've pasted a snippet at the end of the email)
Do you know what I should do to get it in xml?
Many thanks
+++++++ Output
Seq-entry ::= set {
level 1 ,
class nuc-prot ,
descr {
title "Aspergillus flavus aflatoxin (aflR) gene, and translated products" ,
source {
org {
taxname "Aspergillus flavus" ,
db {
{
db "taxon" ,
tag
id 5059 } } ,
orgname {
name
binomial {
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