[Biopython] How to plot PHYLIP phylogenetic tree?!
Italo Maia
italo.maia at gmail.com
Thu Sep 3 12:20:43 UTC 2009
Yeap, i meant the pretty png way. I was thinking of something with
python-imaging, maybe. Anyway, thanks Peter. If it does not exist, i won't
waste time looking for it.
2009/9/3 Peter <biopython at maubp.freeserve.co.uk>
> On Wed, Sep 2, 2009 at 11:54 PM, Italo Maia<italo.maia at gmail.com> wrote:
> > Is there any recepie to plot a phylip phylogenetic tree?
>
> If you mean as a simple text representation, then sort of. Try the
> Bio.Nexus tree objects print methods.
>
> Do you meant draw a nice diagram (e.g. as a PDF or PNG file)? If
> so, no, not at the moment. Some of the Google Summer of Code
> project work including linking to NetworkX for graphics... this has
> not yet been merged into Biopython.
>
> Peter
>
--
"A arrogância é a arma dos fracos."
===========================
Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB e Desktop
Programador Java, Python
Ubuntu User For Life!
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