[Biopython] get back raw records with SeqIO?
Cedar McKay
cmckay at u.washington.edu
Wed Sep 30 19:14:15 EDT 2009
> I hoped you would be - our mailing list discussion earlier in the year
> basically triggered including this in Biopython:
> http://lists.open-bio.org/pipermail/biopython/2009-June/005281.html
>
> Were you able to update your script using the precursor index code
> to use the new Bio.SeqIO.index function? It should have been a drop
> in replacement ;)
My head isn't at that code at the moment, but I'll try to give it a
whirl next week.
> Why do you want to do this? I'd like to understand the desired usage.
I didn't have a specific technical reason. It just seemed like
everything was going towards using SeqIO and things like Bio.Fasta
were being deprecated, so I wanted to get ahead of the curve there.
But if Bio.Genbank is going to be around for a long time, I don't have
any problem with doing it that way.
Thanks again.
C
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