[Biopython] Biopython and Snow Leopard

[Kelly F Oakeson]

Peter,
I will give it a shot once I get back from class, ah the joys of being  
a grad student.

Kelly O.

On Sep 9, 2009, at 10:35 AM, "Peter" <biopython at maubp.freeserve.co.uk>  
wrote:

> On Wed, Sep 9, 2009 at 5:26 PM, Kelly F  
> Oakeson<kelly.oakeson at utah.edu> wrote:
>> Peter,
>> I only ran the setup.py test, but here are the results:
>> $ python setup.py test
>> running test
>> test_Ace ... ok
>> test_AlignIO ... ok
>> test_BioSQL ... skipping. Enter your settings in Tests/ 
>> setup_BioSQL.py
>> (not important if you do not plan to use BioSQL).
>> test_BioSQL_SeqIO ... skipping. Enter your settings in Tests/
>> setup_BioSQL.py (not important if you do not plan to use BioSQL).
>> test_CAPS ... ok
>> test_Clustalw ... ok
>> test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you
>> want to use Bio.Clustalw.
>> test_Cluster ... skipping. If you want to use Bio.Cluster, install
>> NumPy first and then reinstall Biopython
>> ...
>> Bio.Wise.psw docstring test ... ok
>> Bio.Motif docstring test ... ok
>> --- 
>> -------------------------------------------------------------------
>> Ran 124 tests in 62.858 seconds
>
> Excellent - a clean bill of health.
>
> Do you want to try installing NumPy now, and then reinstalling
> Biopython to see if everything works? ;)
>
> Peter