[Biopython] Phylogenetic trees with biopython?

[Italo Maia]

*Not working*
/usr/bin/clustalw -infile=/home/myuser/Temp/coi.dnd -tree -outputtree=PHYLIP
-tossgaps -clustering NJ

*Working*
/usr/bin/clustalw -infile=/home/myuser/Temp/coi.dnd -tree -outputtree=PHYLIP
-tossgaps -clustering=NJ

2009/9/3 Peter <biopython at maubp.freeserve.co.uk>

> On Wed, Sep 2, 2009 at 11:13 PM, Italo Maia<italo.maia at gmail.com> wrote:
> > I'll try pycongent too but, for now, i'll leave it with clustalw for
> being
> > the fastest way for me to get it done. Anyway, the "clustering" option
> for
> > ClustalCommandline seems to be buggy. In the _Option parameter, equate
> > should be set to True, in order for it to work.
>
> Could you show us a command line string that works, and a command line
> string that doesn't?
>
> Peter
>



-- 
"A arrogância é a arma dos fracos."

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Italo Moreira Campelo Maia
Ciência da Computação - UECE
Desenvolvedor WEB e Desktop
Programador Java, Python
Ubuntu User For Life!
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http://eusouolobomal.blogspot.com/
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