[Biopython] How to get sequences upstream of TSS of genes?

[Peng Yu]

On Fri, Oct 16, 2009 at 10:56 AM, Steve Lianoglou
<mailinglist.honeypot at gmail.com> wrote:
> Hi,
>
> On Oct 16, 2009, at 11:44 AM, Peng Yu wrote:
>
>> My question was how to figure what type of geneID it was for 'Krt83'?
>> I tried 'Ensembl Gene ID(s)' in the menu and put 'Krt83' in the box
>> below it. But I get an empty mart_export.txt file.
>
>
> I'm guessing you're filters are set wrong.
>
> Try with:
>  * FILTER set to: MGI symbol
>  * ATTRIBUTES set to: Ensembl Gene ID, Ensembl Transcript ID, MGI Symbol
>
> You'd get:
>
> Ensembl Gene ID Ensembl Transcript ID   MGI symbol
> ENSMUSG00000047641      ENSMUST00000108897      Krt83
> ENSMUSG00000047641      ENSMUST00000081945      Krt83

It seems that it can not report both MGI symbol and the 5kb upstream
sequences simultaneously from Ensembl website. Is it true? If so,
probably I will have to make a short program to combine the results.