[Biopython] Problems parsing with PSIBlastParser

[Peter]

On Wed, Oct 14, 2009 at 4:02 PM, Andrea <andrea at biodec.com> wrote:
>>
>> Andrea - do you have any small example output files with this
>> problem? If it does occur fairly often (1 to 2% of the time), then
>> we should try and update the parser to cope. Miguel's example
>> is useful for testing while working on a bug fix, but too big to
>> include as part the unit tests.
>
> mmm... i've to search. I've some "cache" of gzipped blastpgp outputs.
> But I'm not sure i've the original (maybe already patched).... waht I'm
> sure, is that in the next month I'm going to run almost 100.000
> blasptpg so I'll for sure find something small. ;-)

Great.

>> If you saw "Query 0" output at the command line (shell), then that is
>> worth knowing.
>
> i think so.

OK.

>> Could you upload your "Query 0" patch to Bug 2927?
>> http://bugzilla.open-bio.org/show_bug.cgi?id=2927
>
> Now i'm quite busy, because i'm working on a different project and i've
> to manage deliveries... but i will for sure upload my patch ASAP.

Thanks.

Peter