[Biopython] Is there any Entrez Gene parser out there?

Peter biopython at maubp.freeserve.co.uk
Tue Oct 13 19:18:58 EDT 2009


On Tue, Oct 13, 2009 at 11:45 PM, Carlos Javier Borroto
<carlos.borroto at gmail.com> wrote:
> Do biopython have a parser for Entrez Gene?, Does someone know if
> there is any python parser for this database at all?

The Bio.Entrez.read() should be fine with the XML Entrez
Gene data, or try the recently added Bio.Entrez.parse()
for large datasets (incremental parsing).

Peter


More information about the Biopython mailing list