[Biopython] Problems parsing with PSIBlastParser
Miguel Ortiz Lombardia
ibdeno at gmail.com
Tue Oct 13 07:58:23 EDT 2009
>>>>
>>>> Do you remember what version of Biopython you used to be running
>>>> before updating to 1.52? This would help to narrow down the change
>>>> triggering this problem.
>>>>
>>>
>>> Sorry, can't tell it for sure, but it was whatever version was
>>> current in
>>> March 2009.
>>
>> Probably Biopython 1.49 then. That may help.
>>
>
> Hmm - the switch to using subprocess (on Python 2.4+ or later) was
> made
> in October 2008, and would have first appeared in Biopython 1.49.
> Maybe
> you were using Biopython 1.48 before - or the issue is something else.
>
> Peter
It may well have been 1.48... Having a closer look at the files from
my last successful runs I discover the actually come from November
2008...
I'm now running the tests you suggested.
Sorry not to have copied the list in the previous post!
Best,
-- Miguel
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