[BioPython] The count method of a Seq (or MutableSeq) object

Leighton Pritchard lpritc at scri.ac.uk
Fri Mar 6 07:15:59 EST 2009


In the spirit of being blindingly obvious, how about:

Seq.overlapping_count()

;)

L.


On 06/03/2009 11:52, "Michiel de Hoon" <mjldehoon at yahoo.com> wrote:

> 
>>> Another option is to continue to use count() for a Python-style count,
>>> and to add a new method that does a overlapping-type count. For this
>>> new method we'd need a clear but short name, and I can't think of
>>> anything now.
>>> 
>> Did you like plan (c), which preserves the Python string style count
>> as the default but offers the non-overlapping count via an optional
>> argument?
>> 
> It's also OK, but if we use a different method name we can leave count()
> untouched altogether.

-- 
Dr Leighton Pritchard MRSC
D131, Plant Pathology Programme, SCRI
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