[Biopython] blastall several alignment viewings options

[Stefanie Lück]

Thanks Peter! I expected this, I just wanted to be sure since it's stupid to 
recreate things which are already existing.
Have a nice weekend!
Stefanie


----- Original Message ----- 
From: "Peter" <biopython at maubp.freeserve.co.uk>
To: "Stefanie Lück" <lueck at ipk-gatersleben.de>
Cc: <biopython at biopython.org>
Sent: Friday, July 31, 2009 11:18 AM
Subject: Re: [Biopython] blastall several alignment viewings options


On Fri, Jul 31, 2009 at 9:27 AM, Stefanie Lück<lueck at ipk-gatersleben.de> 
wrote:
> Hello!
>
> is there a way to set 2 or more alignment viewing options in one blast 
> run?
> I would like to get the xml and the Query-anchored (and maybe some other)
> but to run Blast twice would be kind of stupid and slowing down.

I don't think there is. The XML file should contain enough data to recreate
some of the other views (if I recall correctly Sebastian Bassi has a script 
to
do that). However, that may not be possible for the Query-anchored output.

Peter