[Biopython] some eye opening stats
Istvan Albert
iua1 at psu.edu
Thu Dec 17 13:47:23 EST 2009
Hello Everyone,
So I ran some statistics on this group (see below) that includes the
entire past year. Make you own decisions based on it.
Here is one of my observation: I find it saddening that I made the
list at number 18! That's some niche list where one person posting
ten messages in a whole year gets to be at number 18. In fact I only
need three more posts to make myself top ten poster! Would you still
claim this to be a good way to establish, grow and interact with a
community?
I said this many times before, and I'll try for this to be the last
time I bring this up:
I believe biopython is a niche software tool because *YOU* are
limiting its reach *YOURSELVES* by making inappropriate decisions as
far as accessibility and community goes. It will stay so as long as
you don't recognize and act on this.
best regards,
Istvan Albert
=================================
Statistics from 1.12.2008 to 17.12.2009
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
***** People who have written most messages:
+----+-----Author-----------------------------------+--Msg-+-Percent-+
| 1 | biopython at maubp.freeserve.co.uk (Peter) | 472 | 39.70 % |
| 2 | chapmanb at 50mail.com (Brad Chapman) | 53 | 4.46 % |
| 3 | p.j.a.cock at googlemail.com (Peter Cock) | 36 | 3.03 % |
| 4 | lueck at ipk-gatersleben.de (=?iso-8859-1?Q? | 27 | 2.27 % |
| 5 | mjldehoon at yahoo.com (Michiel de Hoon) | 23 | 1.93 % |
| 6 | cjfields at illinois.edu (Chris Fields) | 22 | 1.85 % |
| 7 | dalloliogm at gmail.com (Giovanni Marco Dall | 21 | 1.77 % |
| 8 | winda002 at student.otago.ac.nz (David Winte | 15 | 1.26 % |
| 9 | lpritc at scri.ac.uk (Leighton Pritchard) | 14 | 1.18 % |
| 10 | cmckay at u.washington.edu (Cedar McKay) | 13 | 1.09 % |
| 11 | italo.maia at gmail.com (Italo Maia) | 12 | 1.01 % |
| 12 | kellrott at gmail.com (Kyle Ellrott) | 12 | 1.01 % |
| 13 | rodrigo_faccioli at uol.com.br (Rodrigo facc | 12 | 1.01 % |
| 14 | bartek at rezolwenta.eu.org (Bartek Wilczyns | 12 | 1.01 % |
| 15 | anaryin at gmail.com (=?UTF-8?Q?Jo=C3=A3o_Ro | 11 | 0.93 % |
| 16 | bartomas at gmail.com (bar tomas) | 11 | 0.93 % |
| 17 | pzs at dcs.gla.ac.uk (Peter Saffrey) | 11 | 0.93 % |
| 18 | iua1 at psu.edu (Istvan Albert) | 10 | 0.84 % |
| 19 | dejmail at gmail.com (Liam Thompson) | 10 | 0.84 % |
| 20 | stran104 at chapman.edu (Matthew Strand) | 10 | 0.84 % |
| 21 | ibdeno at gmail.com (Miguel Ortiz Lombardia) | 9 | 0.76 % |
| 22 | pengyu.ut at gmail.com (Peng Yu) | 9 | 0.76 % |
| 23 | yvan.strahm at bccs.uib.no (Yvan Strahm) | 9 | 0.76 % |
| 24 | kelly.oakeson at utah.edu (Kelly F Oakeson) | 9 | 0.76 % |
| 25 | carlos.borroto at gmail.com (Carlos Javier B | 9 | 0.76 % |
+----+----------------------------------------------+------+---------+
| | other | 337 | 28.34 % |
+----+----------------------------------------------+------+---------+
***** Best authors, by total size of their messages (w/o quoting):
+----+-----Author-------------------------------------------+-KBytes-+
| 1 | biopython at maubp.freeserve.co.uk (Peter) | 391.4 |
| 2 | chapmanb at 50mail.com (Brad Chapman) | 48.1 |
| 3 | lpritc at scri.ac.uk (Leighton Pritchard) | 39.1 |
| 4 | p.j.a.cock at googlemail.com (Peter Cock) | 35.7 |
| 5 | lueck at ipk-gatersleben.de (=?iso-8859-1?Q?Stefanie | 27.9 |
| 6 | matzke at berkeley.edu (Nick Matzke) | 21.2 |
| 7 | animesh.agrawal at anu.edu.au (Animesh Agrawal) | 21.1 |
| 8 | kelly.oakeson at utah.edu (Kelly F Oakeson) | 16.7 |
| 9 | pzs at dcs.gla.ac.uk (Peter Saffrey) | 15.4 |
| 10 | dalloliogm at gmail.com (Giovanni Marco Dall'Olio) | 14.7 |
| 11 | natassa_g_2000 at yahoo.com (natassa) | 12.7 |
| 12 | hlapp at gmx.net (Hilmar Lapp) | 12.7 |
| 13 | mmokrejs at ribosome.natur.cuni.cz (=?UTF-8?B?TWFydG | 12.5 |
| 14 | cjfields at illinois.edu (Chris Fields) | 12.0 |
| 15 | bartek at rezolwenta.eu.org (Bartek Wilczynski) | 11.6 |
| 16 | winda002 at student.otago.ac.nz (David Winter) | 11.3 |
| 17 | cmckay at u.washington.edu (Cedar McKay) | 11.0 |
| 18 | mjldehoon at yahoo.com (Michiel de Hoon) | 10.9 |
| 19 | dejmail at gmail.com (Liam Thompson) | 10.6 |
| 20 | rodrigo_faccioli at uol.com.br (Rodrigo faccioli) | 10.3 |
| 21 | anaryin at gmail.com (=?UTF-8?Q?Jo=C3=A3o_Rodrigues? | 9.7 |
| 22 | fufezan at uni-muenster.de (Christian Fufezan) | 9.6 |
| 23 | kellrott at gmail.com (Kyle Ellrott) | 9.2 |
| 24 | peter at maubp.freeserve.co.uk (Peter) | 8.9 |
| 25 | ibdeno at gmail.com (Miguel Ortiz Lombardia) | 8.3 |
+----+------------------------------------------------------+--------+
***** Best authors, by average size of their message (w/o quoting):
+----+-----Author--------------------------------------------+-bytes-+
| 1 | agarbino at gmail.com (Alex Garbino) | 7991 |
| 2 | aduran at fhcrc.org (Duran, Alysha M) | 3893 |
| 3 | n.j.loman at bham.ac.uk (Nick Loman) | 3877 |
| 4 | mmueller at python-academy.de (=?ISO-8859-15?Q?Mike_M | 3816 |
| 5 | animesh.agrawal at anu.edu.au (Animesh Agrawal) | 3598 |
| 6 | ivan at biodec.com (Ivan Rossi) | 2947 |
| 7 | thomas.e.keller at gmail.com (Thomas Keller) | 2937 |
| 8 | lpritc at scri.ac.uk (Leighton Pritchard) | 2860 |
| 9 | matzke at berkeley.edu (Nick Matzke) | 2717 |
| 10 | jhcepas at gmail.com (Jaime Huerta Cepas) | 2705 |
| 11 | fufezan at uni-muenster.de (Christian Fufezan) | 2447 |
| 12 | natassa_g_2000 at yahoo.com (natassa) | 2175 |
| 13 | bav853 at bham.ac.uk (Bhima A van der Molen) | 1987 |
| 14 | kteague at bcgsc.ca (Kevin Teague) | 1932 |
| 15 | danielchubb at gmail.com (Daniel Chubb) | 1923 |
| 16 | lueck at ipk-gatersleben.de (=?utf-8?Q?Stefanie_L=C3= | 1919 |
| 17 | dalloliogm at fastwebnet.it (Giovanni Marco Dall'Olio | 1915 |
| 18 | kelly.oakeson at utah.edu (Kelly F Oakeson) | 1895 |
| 19 | bav853 at bham.ac.uk (Bhima Auro van der Molen) | 1874 |
| 20 | darnells at dnastar.com (Steve Darnell) | 1768 |
| 21 | gatoygata at hotmail.com (Joaquin Abian Monux) | 1744 |
| 22 | srini_iyyer_bio at yahoo.com (Srinivas Iyyer) | 1733 |
| 23 | bassbabyface at yahoo.com (Ben O'Loghlin) | 1698 |
| 24 | hlapp at gmx.net (Hilmar Lapp) | 1624 |
| 25 | mmokrejs at ribosome.natur.cuni.cz (=?UTF-8?B?TWFydGl | 1603 |
+----+-------------------------------------------------------+-------+
***** Table showing the most successful subjects:
+----+----Subject-----------------------------------+--Msg-+-Percent-+
| 1 | [Biopython] suggestion: moving to the discus | 33 | 2.78 % |
| 2 | [Biopython] Problems parsing with PSIBlastPa | 32 | 2.69 % |
| 3 | [BioPython] The count method of a Seq (or Mu | 23 | 1.93 % |
| 4 | [Biopython] Biopython and Snow Leopard | 21 | 1.77 % |
| 5 | [Biopython] Phylogenetic trees with biopytho | 16 | 1.35 % |
| 6 | [Biopython] Indexing large sequence files | 15 | 1.26 % |
| 7 | [Biopython] SQL Alchemy based BioSQL | 14 | 1.18 % |
| 8 | [BioPython] AlignIO: Sequences of different | 13 | 1.09 % |
| 9 | [Biopython] searching for a human chromosome | 13 | 1.09 % |
| 10 | [Biopython] BLAST against mouse genome only | 12 | 1.01 % |
| 11 | [Biopython] How to get sequences upstream of | 12 | 1.01 % |
| 12 | [Biopython] Parsing large blast files | 11 | 0.93 % |
| 13 | [Biopython] Additions to the SeqRecord | 11 | 0.93 % |
| 14 | [Biopython] Biopython & p3d | 11 | 0.93 % |
| 15 | [BioPython] Feedback from Biopython 1.50 bet | 10 | 0.84 % |
| 16 | [BioPython] Adding startswith and endswith m | 10 | 0.84 % |
| 17 | [Biopython] Bio.Sequencing.Ace | 10 | 0.84 % |
| 18 | [Biopython] Entrez.read return value is type | 10 | 0.84 % |
| 19 | [Biopython] SeqIO for fasta conversion of Il | 10 | 0.84 % |
| 20 | [Biopython] Parsing problem | 9 | 0.76 % |
| 21 | [Biopython] Fasta.index_file: functionality | 9 | 0.76 % |
| 22 | [Biopython] Adaptor trimmer and dimers | 9 | 0.76 % |
| 23 | [BioPython] Is query_length really the lengt | 8 | 0.67 % |
| 24 | [BioPython] Reading Roche 454 binary SFF fil | 8 | 0.67 % |
| 25 | [Biopython] Writing into a PDB file using PD | 8 | 0.67 % |
+----+----------------------------------------------+------+---------+
| | other | 851 | 71.57 % |
+----+----------------------------------------------+------+---------+
***** Most used email clients:
+----+----Mailer------------------------------------+--Msg-+-Percent-+
| 1 | (unknown) | 1189 |100.00 % |
+----+----------------------------------------------+------+---------+
| | other | 0 | 0.00 % |
+----+----------------------------------------------+------+---------+
***** Table of maximal quoting:
+----+-----Author------------------------------------------+-Percent-+
| 1 | golubchi at stats.ox.ac.uk (Tanya Golubchik) | 94.68 % |
| 2 | fredgca at hotmail.com (Frederico Arnoldi) | 92.56 % |
| 3 | srikrishnamohan at gmail.com (km) | 92.28 % |
| 4 | cmckay at u.washington.edu (Cedar Mckay) | 88.19 % |
| 5 | harekrishna at gmail.com (Austin Davis-Richar | 87.51 % |
| 6 | biopython.chen at gmail.com (chen Ku) | 86.14 % |
| 7 | wgheath at gmail.com (William Heath) | 85.12 % |
| 8 | jkhilmer at gmail.com (Jonathan Hilmer) | 82.50 % |
| 9 | andrea at biodec.com (Andrea) | 80.82 % |
| 10 | nuin at genedrift.org (Paulo Nuin) | 79.90 % |
| 11 | lueck at ipk-gatersleben.de (lueck at ipk-gat | 78.81 % |
| 12 | ibdeno at gmail.com (Miguel Ortiz Lombardia) | 78.57 % |
| 13 | oda at georgetown.edu (Ogan ABAAN) | 75.33 % |
| 14 | sean.maceach at gmail.com (Sean MacEachern) | 75.09 % |
| 15 | pengyu.ut at gmail.com (Peng Yu) | 73.17 % |
| 16 | fungazid at yahoo.com (Fungazid) | 71.57 % |
| 17 | yvan.strahm at bccs.uib.no (Yvan Strahm) | 70.23 % |
| 18 | cjfields at illinois.edu (Chris Fields) | 70.18 % |
| 19 | sdavis2 at mail.nih.gov (Sean Davis) | 68.54 % |
| 20 | thomas.hamelryck at gmail.com (Thomas Hamelry | 68.31 % |
| 21 | mjldehoon at yahoo.com (Michiel de Hoon) | 66.49 % |
| 22 | mavata at gmail.com (Manu Tamminen) | 66.42 % |
| 23 | eric.talevich at gmail.com (Eric Talevich) | 65.92 % |
| 24 | bsouthey at gmail.com (Bruce Southey) | 64.70 % |
| 25 | biopythonlist at gmail.com (dr goettel) | 64.53 % |
+----+-----------------------------------------------------+---------+
| | average | 44.57 % |
+----+-----------------------------------------------------+---------+
***** Graph showing number of messages written during hours of day:
100% ---------------------#--------------------------- - 146
90% ---------------------#--------------------------- msgs
80% ---------------------#---------------------------
70% ---------------------#-#-------------------------
60% ---------------------#-#-#-#-#---#---------------
50% ---------------------#-#-#-#-#-#-#-#-------------
40% ---------------------#-#-#-#-#-#-#-#-#-----------
30% -----------------#-#-#-#-#-#-#-#-#-#-#-#---------
20% -----------------#-#-#-#-#-#-#-#-#-#-#-#---------
10% ---------------#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-
* * * * * * * * * * * * * * * * * * * * * * * *
hour 0 5 11 17 23
***** Graph showing number of messages written during days of month:
100% -----------------------------#--------------------------------- - 74
90% -----------------------------#-#------------------------------- msgs
80% -----------------#-----------#-#-------------------------------
70% -#---------------#---------#-#-#---#---------------------------
60% -#-------#-#-----#---------#-#-#-#-#-#-#-----------------#-----
50% -#-------#-#-----#-------#-#-#-#-#-#-#-#-----#-#---------#-----
40% -#-#-----#-#-----#-----#-#-#-#-#-#-#-#-#-#---#-#---#---#-#-----
30% -#-#-#-#-#-#---#-#-#---#-#-#-#-#-#-#-#-#-#---#-#-#-#-#-#-#-----
20% -#-#-#-#-#-#-#-#-#-#---#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-
10% -#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-#-
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
day 1 6 12 18 24 31
***** Graph showing number of messages written during days of week:
100% -------------#--------------- - 262
90% ---------#---#--------------- msgs
80% ---------#---#---#-----------
70% -#---#---#---#---#-----------
60% -#---#---#---#---#-----------
50% -#---#---#---#---#-----------
40% -#---#---#---#---#-----------
30% -#---#---#---#---#-----------
20% -#---#---#---#---#-----------
10% -#---#---#---#---#---#---#---
* * * * * * *
Mon Tue Wed Thu Fri Sat Sun
***** Maximal quoting:
Author : andrea at biodec.com (Andrea)
Subject : [Biopython] Problems parsing with PSIBlastParser
Date : Thu, 15 Oct 2009 17:39:48 +0200
Quote ratio: 98.63% / 15890 bytes
***** Longest message:
Author : chapmanb at 50mail.com (Brad Chapman)
Subject : [Biopython] Skipping over blank/erroneous Entrez.esummary()
Date : Wed, 7 Oct 2009 16:29:11 -0400
Size : 18503 bytes
***** Most successful subject:
Subject : [Biopython] suggestion: moving to the discussion
list to Google
No. of msgs: 33
Total size : 43527 bytes
***** Final summary:
Total number of messages: 1189
Total number of different authors: 159
Total number of different subjects: 332
Total size of messages (w/o headers): 1992170 bytes
Average size of a message: 1675 bytes
***** Generated by MailListStat v1.3, (C) 2001-2003 <marki (at) nexin.sk>
***** See http://freshmeat.net/projects/mls for details...
--
Istvan Albert
http://www.personal.psu.edu/iua1
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