[Biopython] Entrez.efetch Service unavailable!
Kevin Lam
aboulia at gmail.com
Tue Dec 15 22:52:36 EST 2009
Hi I have been trying to use
Entrez.efetch
to download ~1000 bacteria genomes
I read in the docs that biopython will auto take care of the delay and fetch
via the preferred site for download scripts
but I have been getting service unavailable errors at GMT +8 1100am
is this normal? Or should i edit the source to give a larger delay buffer?
So far I have only managed to get 3 fasta sequences out
Or should I bring this up to NCBI instead?
Traceback (most recent call last):
File "../retr-fasta.py", line 15, in ?
handle = Entrez.efetch(db="genome", id=uid, rettype="fasta")
File
"/home/k/lib/biopython-biopython-9a41381/build/lib.linux-x86_64-2.4/Bio/Entrez/__init__.py",
line 105, in efetch
return _open(cgi, variables)
File
"/home/k/lib/biopython-biopython-9a41381/build/lib.linux-x86_64-2.4/Bio/Entrez/__init__.py",
line 343, in _open
raise IOError("Service unavailable!")
IOError: Service unavailable!
Cheers
Kevin
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