[Biopython] MuscleCommandline and phyiout

[Peter]

On Tue, Dec 1, 2009 at 7:10 AM, John Cumbers <johncumbers at gmail.com> wrote:
> Hello,
>
> I'm using the MuscleCommandline wrapper and I'm having trouble getting the
> Phylip interleaved output format.  For the Muscle command line I would type
> "muscle -in myinputfile -phyiout myoutputfile"

What version of MUSCLE do you have? v3.7 doesn't mention this
option in the command line help, nor does the current manual:
http://www.drive5.com/muscle/muscle.html

Peter