[BioPython] Feedback from Biopython 1.50 beta?
Martin MOKREJŠ
mmokrejs at ribosome.natur.cuni.cz
Wed Apr 15 14:08:34 UTC 2009
Peter wrote:
> Dear Biopythoneers,
>
> There is a saying "no news is good news", but as per the title - can
> we have some feedback from the Biopython 1.50 beta release please?
The tests gave me:
test_DocSQL ... /usr/lib/python2.6/site-packages/MySQLdb/__init__.py:34: DeprecationWarning: the sets module is deprecated
from sets import ImmutableSet
ok
test_NCBIStandalone ... ERROR
======================================================================
ERROR: test_NCBIStandalone
----------------------------------------------------------------------
Traceback (most recent call last):
File "run_tests.py", line 247, in runTest
suite = unittest.TestLoader().loadTestsFromName(name)
File "/usr/lib/python2.6/unittest.py", line 576, in loadTestsFromName
module = __import__('.'.join(parts_copy))
File "test_NCBIStandalone.py", line 9, in <module>
from Bio.Blast import NCBIStandalone
File "/home/mmokrejs/proj/biopython/build/lib.linux-i686-2.6/Bio/Blast/NCBIStandalone.py", line 1673
<<<<<<< NCBIStandalone.py
^
SyntaxError: invalid syntax
----------------------------------------------------------------------
Ran 111 tests in 373.969 seconds
FAILED (failures = 1)
$
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