[BioPython] BioSQL / phylodb

[Peter]

On Fri, Oct 24, 2008 at 11:46 AM, Cymon Cox <cy at cymon.org> wrote:
> Hi All,
>
> Ive been looking at the phylodb extension to BioSQL. Does anyone have any
> python code for uploading a tree?
>
> Cheers, C.

Not that I'm aware of, no.

Adding support to Biopython's BioSQL module to do this, and also
retrieve the data as a tree would be nice.  The Bio.Nexus.Tree class
would seem a logical representation to try and use.  As an aside,
being about to load a taxonomy from the main BioSQL taxon/taxon_name
tables as a tree might be nice too.

Peter